Package: immReferent
Title: An Interface for Immune Receptor and HLA Gene Reference Data
Version: 1.0.0
Authors@R: c(
    person(given = "Nick", family = "Borcherding", role = c("aut", "cre"), email = "ncborch@gmail.com"))
Description: Provides a consistent interface for downloading, storing, and
    accessing immune receptor (TCR/BCR) and HLA sequences from IMGT,
    IPD-IMGT/HLA, and OGRDB (AIRR-C). Supports export to popular analysis
    tools including MiXCR, TRUST4, Cell Ranger, and IgBLAST. This package
    serves as a core dependency for immunogenomics packages, ensuring
    reliable and high-quality sequence access with local caching for
    reproducibility.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.3
biocViews: Software, Annotation, Sequencing
Depends: R (>= 4.5.0)
Imports: Biostrings, httr, jsonlite, methods, rvest, tibble, yaml
Suggests: BiocManager, BiocStyle, knitr, mockery, spelling, rmarkdown,
        testthat (>= 3.0.0), withr
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://github.com/BorchLab/immReferent/
BugReports: https://github.com/BorchLab/immReferent/issues
git_url: https://git.bioconductor.org/packages/immReferent
git_branch: RELEASE_3_23
git_last_commit: 5f85d75
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28
NeedsCompilation: no
Packaged: 2026-04-28 22:55:23 UTC; biocbuild
Author: Nick Borcherding [aut, cre]
Maintainer: Nick Borcherding <ncborch@gmail.com>
Built: R 4.6.0; ; 2026-04-29 04:47:05 UTC; unix
