R: An Interface for Immune Receptor and HLA Gene Reference Data

# An Interface for Immune Receptor and HLA Gene Reference Data

## Documentation for package ‘immReferent’ version 1.0.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

immReferent-package | immReferent: An Interface for Immune Receptor and HLA Gene Reference Data
exportCellRanger | Export Reference Sequences to Cell Ranger VDJ Format
exportIgBLAST | Export Reference Sequences to IgBLAST Format
exportMiXCR | Export Reference Sequences to MiXCR Format
exportTRUST4 | Export Reference Sequences to TRUST4 Format
getIMGT | Download and Load Immune Receptor and HLA Sequences from IMGT
getOGRDB | Download and Load Immune Receptor Germline Sequences from OGRDB
immReferent | immReferent: An Interface for Immune Receptor and HLA Gene Reference Data
is_imgt_available | Check if IMGT Website is Available
is_ogrdb_available | Check if OGRDB Website is Available
listIMGT | List Datasets in the Local Cache
listOGRDB | List OGRDB Datasets in Local Cache
loadIMGT | Load Cached IMGT/HLA Sequences
loadOGRDB | Load Cached OGRDB Sequences
refreshIMGT | Force Re-download of IMGT/HLA Sequences
refreshOGRDB | Force Re-download of OGRDB Sequences