Package: loci2path
Type: Package
Title: Loci2path: regulatory annotation of genomic intervals based on
        tissue-specific expression QTLs
Version: 1.32.0
Author: Tianlei Xu
Maintainer: Tianlei Xu <tianlei.xu@emory.edu>
Description: loci2path performs statistics-rigorous enrichment analysis 
    of eQTLs in genomic regions of interest. 
    Using eQTL collections provided by the Genotype-Tissue Expression (GTEx) 
    project and pathway collections from MSigDB. 
License: Artistic-2.0
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5)
Imports: pheatmap, wordcloud, RColorBrewer, data.table, methods,
        grDevices, stats, graphics, GenomicRanges, BiocParallel,
        S4Vectors
Suggests: BiocStyle, knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 6.0.1
biocViews: FunctionalGenomics, Genetics, GeneSetEnrichment, Software,
        GeneExpression, Sequencing, Coverage, BioCarta
URL: https://github.com/StanleyXu/loci2path
BugReports: https://github.com/StanleyXu/loci2path/issues
Collate: 'allClasses.R' 'allGenerics.R' 'allAccessor.R'
        'check.geneid.R' 'loci2path.demo-data.R'
        'loci2pathResult-methods.R' 'query-methods.R' 'show-methods.R'
git_url: https://git.bioconductor.org/packages/loci2path
git_branch: RELEASE_3_23
git_last_commit: 97dcb4d
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28
NeedsCompilation: no
Packaged: 2026-04-28 22:38:11 UTC; biocbuild
Built: R 4.6.0; ; 2026-04-29 04:48:30 UTC; unix
