R: Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs

# Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs

## Documentation for package ‘loci2path’ version 1.32.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

biocarta | eQTL geneset enrichment query demo data
check.geneid | check compatibility of gene identifiers between eQTL set and gene set
coveredGene | loci2pathResult Class
coveredGene-method | loci2pathResult Class
description | geneSet Class
description-method | geneSet Class
eqtlGene | eqtlSet Class
eqtlGene-method | eqtlSet Class
eqtlId | eqtlSet Class
eqtlId-method | eqtlSet Class
eqtlRange | eqtlSet Class
eqtlRange-method | eqtlSet Class
eqtlSet | eqtlSet Class
eqtlSet-class | eqtlSet Class
eset.list | eQTL geneset enrichment query demo data
geneSet | geneSet Class
geneSet-class | geneSet Class
geneSetList | geneSet Class
geneSetList-method | geneSet Class
getHeatmap | Generate heatmap of enrichment matrix from query result
getHeatmap-method | Generate heatmap of enrichment matrix from query result
getMat | Extract tissue/geneset enrichment matrix from query result
getMat-method | Extract tissue/geneset enrichment matrix from query result
getPathDescription | Extract description for enriched pathways from query result and geneSet object
getPathDescription-method | Extract description for enriched pathways from query result and geneSet object
getPval | Extract tissue/geneset enrichment p-value distribution from query result
getPval-method | Extract tissue/geneset enrichment p-value distribution from query result
getTissueDegree | Extract tissue degree from query result
getTissueDegree-method | Extract tissue degree from query result
getWordcloud | Plot word cloud using frequent terms of pathways and genes
getWordcloud-method | Plot word cloud using frequent terms of pathways and genes
loci2pathResult | loci2pathResult Class
loci2pathResult-class | loci2pathResult Class
numGene | geneSet Class
numGene-method | geneSet Class
query | Query enrichment in geneset through multiple eQTL sets.
query-method | Query enrichment in geneset through multiple eQTL sets.
query.gr | eQTL geneset enrichment query demo data
resultTable | loci2pathResult Class
resultTable-method | loci2pathResult Class
tissue | eqtlSet Class
tissue-method | eqtlSet Class