Package: nnSVG
Version: 1.16.1
Title: Scalable identification of spatially variable genes in
        spatially-resolved transcriptomics data
Description: Method for scalable identification of spatially variable
        genes (SVGs) in spatially-resolved transcriptomics data. The
        method is based on nearest-neighbor Gaussian processes and uses
        the BRISC algorithm for model fitting and parameter estimation.
        Allows identification and ranking of SVGs with flexible length
        scales across a tissue slide or within spatial domains defined
        by covariates. Scales linearly with the number of spatial
        locations and can be applied to datasets containing thousands
        or more spatial locations.
Authors@R: c(
    person("Lukas M.", "Weber", 
           email = "weberlm3@gmail.com", 
           role = c("aut", "cre"), 
           comment = c(ORCID = "0000-0002-3282-1730")), 
    person("Stephanie C.", "Hicks", 
           email = "shicks19@jhu.edu", 
           role = c("aut"), 
           comment = c(ORCID = "0000-0002-7858-0231")))
URL: https://github.com/lmweber/nnSVG
BugReports: https://github.com/lmweber/nnSVG/issues
License: MIT + file LICENSE
Encoding: UTF-8
biocViews: Spatial, SingleCell, Transcriptomics, GeneExpression,
        Preprocessing
Depends: R (>= 4.2)
Imports: SpatialExperiment, SingleCellExperiment, SummarizedExperiment,
        BRISC, BiocParallel, Matrix, matrixStats, stats, methods
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, rmarkdown, STexampleData,
        WeberDivechaLCdata, scran, ggplot2, testthat
RoxygenNote: 7.2.3
Config/pak/sysreqs: libmagick++-dev gsfonts libicu-dev libssl-dev
        zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-07-14 15:53:08 UTC
RemoteUrl: https://github.com/bioc/nnSVG
RemoteRef: RELEASE_3_23
RemoteSha: 1c95f705d19e17260fcd8ac89f56a3a1f1143ef6
NeedsCompilation: no
Packaged: 2026-07-14 22:00:19 UTC; root
Author: Lukas M. Weber [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3282-1730>),
  Stephanie C. Hicks [aut] (ORCID:
    <https://orcid.org/0000-0002-7858-0231>)
Maintainer: Lukas M. Weber <weberlm3@gmail.com>
Built: R 4.6.1; ; 2026-07-14 22:02:37 UTC; unix
