abstract_search         Search the abstracts from the SRA studies
                        available via the recount project
add_metadata            Add additional curated metadata to a recount
                        rse object
add_predictions         Add predicted phenotypes to a recount rse
                        object
all_metadata            This function downloads the metadata for all
                        projects.
browse_study            Open a SRA study id in the SRA website
coverage_matrix         Given a set of regions for a chromosome,
                        compute the coverage matrix for a given SRA
                        study.
download_retry          Retry multiple times to download a file
download_study          Download data for a given SRA study id from the
                        recount project
expressed_regions       Identify expressed regions from the mean
                        coverage for a given SRA project
find_geo                Find the GEO accession id for a given SRA run
geo_characteristics     Build a data.frame from GEO's charactersitics
                        for a given sample
geo_info                Extract information from GEO for a given sample
getRPKM                 Compute an RPKM matrix based on a
                        RangedSummarizedExperiment object
getTPM                  Compute a TPM matrix based on a
                        RangedSummarizedExperiment object
read_counts             Compute read counts
recount_abstract        Summary information at the project level for
                        the recount project
recount_exons           Exon annotation used in recount
recount_genes           Gene annotation used in recount
recount_url             Files and URLs hosted by the recount project
reproduce_ranges        Reproduce the gene or exons used in the
                        RangedSummarizedExperiment objects
rse_gene_SRP009615      RangedSummarizedExperiment at the gene level
                        for study SRP009615
scale_counts            Scale the raw counts provided by the recount
                        project
snaptron_query          Query Snaptron to get data from exon-exon
                        junctions present in Intropolis
