Package: safe
Title: Significance Analysis of Function and Expression
Version: 3.52.1
Author: William T. Barry
Description: SAFE is a resampling-based method for testing functional categories in gene expression experiments. SAFE can be applied to 2-sample and multi-class comparisons, or simple linear regressions. Other experimental designs can also be accommodated through user-defined functions.
Depends: R (>= 2.4.0), AnnotationDbi, Biobase, methods, SparseM
Suggests: GO.db, PFAM.db, reactome.db, hgu133a.db, breastCancerUPP,
        survival, foreach, doRNG, Rgraphviz, GOstats
Maintainer: Ludwig Geistlinger <ludwig.geistlinger@gmail.com>
License: GPL (>= 2)
biocViews: DifferentialExpression, Pathways, GeneSetEnrichment,
        StatisticalMethod, Software
git_url: https://git.bioconductor.org/packages/safe
git_branch: RELEASE_3_23
git_last_commit: b85aafc
git_last_commit_date: 2026-05-01
Repository: Bioconductor 3.23
Date/Publication: 2026-05-03
NeedsCompilation: no
Packaged: 2026-05-03 21:38:12 UTC; biocbuild
Built: R 4.6.0; ; 2026-05-04 03:13:28 UTC; unix
