compare_bubbletrees     Comparison of two bubbletrees generated from
                        the same scRNA-seq data
d_500                   Dataset: 500 PBMCs
d_ccl                   Dataset: scRNA-seq data of 3,918 cells from 5
                        adenocarcinoma cell lines
get_bubbletree_dummy    Build bubbletree from matrix A of
                        low-dimensional projections and vector cs of
                        externally generated cluster IDs
get_bubbletree_graph    Louvain clustering and hierarchical grouping of
                        k' clusters (bubbles)
get_bubbletree_kmeans   k-means clustering and hierarchical grouping of
                        k clusters (bubbles)
get_cat_tiles           Visualization of categorical cell features
                        using tile plots
get_gini                Gini impurity index computed for a clustering
                        solution and a vector of categorical cell
                        feature labels
get_gini_k              Gini impurity index computed for a list of
                        clustering solutions obtained by functions
                        'get_k' or 'get_r' and a vector of categorical
                        cell feature labels
get_k                   Finding optimal number k of clusters
get_num_cell_tiles      Visualization of numeric features of individual
                        cells using tile plots
get_num_tiles           Visualization of numeric cell features using
                        tile plots
get_num_violins         Visualization of numeric cell features using
                        violin plots
get_r                   Finding optimal clustering resulution r and
                        number of communities k'
scBubbletree-package    The R package scBubbletree
