associationTest         Perform statistical test to check whether gene
                        expression is constant across pseudotime within
                        a lineage
celltype                A vector defining cell types, used in the
                        package vignette.
clusterExpressionPatterns
                        Cluster gene expression patterns.
conditionTest           Assess differential expression patterns between
                        conditions within a lineage.
countMatrix             A count matrix, used in the package vignette.
crv                     A SlingshotDataset object, used in the package
                        vignette.
diffEndTest             Perform statistical test to check for DE
                        between final stages of every lineage.
earlyDETest             Perform test of early differences between
                        lineages
evaluateK               Evaluate the optimal number of knots required
                        for fitGAM.
fitGAM                  fitGAM
gamList                 A list of GAM models, used to demonstrate the
                        various tests.
getSmootherPvalues      Get smoother p-value as returned by 'mgcv'.
getSmootherTestStats    Get smoother Chi-squared test statistics.
nknots                  knots
patternTest             Assess differential expression pattern between
                        lineages.
plotGeneCount           Plot gene expression in reduced dimension.
plotSmoothers           Plot the log-transformed counts and the fitted
                        values for a particular gene along all lineages
plot_evalutateK_results
                        Evaluate an appropriate number of knots.
predictCells            predictCells
predictSmooth           predictSmooth
sds                     A SlingshotDataset object, used in the package
                        unit tests.
startVsEndTest          Perform statistical test to check for DE
                        between starting point and the end stages of
                        every lineage
