aecdf	aecdf
approxk2d	approxk2d
aracne2regulon	aracne2regulon
aracne2regulon4cnv	aracne2regulon4cnv
aREA	aREA
as.dist.signatureDistance	as.dist.signatureDistance
bootstrapmsviper	bootstrapmsviper
bootstrapTtest	bootstrapTtest-methods
bootstrapTtest,ExpressionSet-method	bootstrapTtest-methods
bootstrapTtest,matrix-method	bootstrapTtest-methods
bootstrapViper	bootstrapViper
comNames	comNames
distMode	distMode
fcvarna	fcvarna
filterColMatrix	filterColMatrix
filterCV	filterCV-methods
filterCV,ExpressionSet-method	filterCV-methods
filterCV,matrix-method	filterCV-methods
filterRowMatrix	filterRowMatrix
frcv	frcv
frvarna	frvarna
groupPwea3	groupPwea3
integrateSignatures	integrateSignatures
ledge	ledge
loadExpset	loadExpset
msviper	msviper
msviper-class	msviper-class
msviperAnnot	msviperAnnot
msviperClass	msviperClass
msviperCombinatorial	msviperCombinatorial
msviperSynergy	msviperSynergy
plot.msviper	plot.msviper
pruneRegulon	pruneRegulon
pwea3NULLf	pwea3NULLf
pwea3NULLgroups	pwea3NULLgroups
regulon-class	regulon-class
rowTtest	rowTtest-methods
rowTtest,ExpressionSet-method	rowTtest-methods
rowTtest,matrix-method	rowTtest-methods
scale.signatureDistance	scale.signatureDistance
scaleGroups	scaleGroups
shadow	shadow
shadowRegulon	shadowRegulon
signatureDistance	signatureDistance
signatureDistance-class	signatureDistance-class
sigT	sigT
summary.msviper	summary.msviper
ttestNull	ttestNull-methods
ttestNull,ExpressionSet-method	ttestNull-methods
ttestNull,matrix-method	ttestNull-methods
viper	viper
viperRPT	viperRPT
viperSignature	viperSignature-methods
viperSignature,ExpressionSet-method	viperSignature-methods
viperSignature,matrix-method	viperSignature-methods
viperSignature-class	viperSignature-class
viperSimilarity	viperSimilarity
