Package: CNVMetrics
Type: Package
Version: 1.16.0
Date: 2021-11-23
Title: Copy Number Variant Metrics
Description: The CNVMetrics package calculates similarity metrics to
        facilitate copy number variant comparison among samples and/or
        methods. Similarity metrics can be employed to compare CNV
        profiles of genetically unrelated samples as well as those with
        a common genetic background. Some metrics are based on the
        shared amplified/deleted regions while other metrics rely on
        the level of amplification/deletion. The data type used as
        input is a plain text file containing the genomic position of
        the copy number variations, as well as the status and/or the
        log2 ratio values. Finally, a visualization tool is provided to
        explore resulting metrics.
Authors@R: c(person("Astrid", "Deschênes", email = "adeschen@hotmail.com",
    role = c("aut", "cre"),
    comment = c(ORCID = "0000-0001-7846-6749")), 
    person("Pascal", "Belleau", email = "pascal_belleau@hotmail.com",
    role = c("aut"),
    comment = c(ORCID = "0000-0002-0802-1071")),
    person(given="David A.", family="Tuveson",  
    email="dtuveson@cshl.edu", role = c("aut"), 
    comment = c(ORCID = "0000-0002-8017-2712")),
    person("Alexander", "Krasnitz", email = "krasnitz@cshl.edu",
    role = c("aut")))
Encoding: UTF-8
License: Artistic-2.0
Depends: R (>= 4.0)
Imports: GenomicRanges, IRanges, S4Vectors, BiocParallel, methods,
        magrittr, stats, pheatmap, gridExtra, grDevices, rBeta2009
Suggests: BiocStyle, knitr, rmarkdown, testthat, XVector
biocViews: BiologicalQuestion, Software, CopyNumberVariation
VignetteBuilder: knitr
URL: https://github.com/krasnitzlab/CNVMetrics,
        https://krasnitzlab.github.io/CNVMetrics/
BugReports: https://github.com/krasnitzlab/CNVMetrics/issues
RoxygenNote: 7.3.3
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:57:34 UTC
RemoteUrl: https://github.com/bioc/CNVMetrics
RemoteRef: RELEASE_3_23
RemoteSha: 2dfb3a77f4ab12a6122403d6374383d287b4eeb5
NeedsCompilation: no
Packaged: 2026-05-04 08:55:16 UTC; root
Author: Astrid Deschênes [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-7846-6749>),
  Pascal Belleau [aut] (ORCID: <https://orcid.org/0000-0002-0802-1071>),
  David A. Tuveson [aut] (ORCID: <https://orcid.org/0000-0002-8017-2712>),
  Alexander Krasnitz [aut]
Maintainer: Astrid Deschênes <adeschen@hotmail.com>
Built: R 4.6.0; ; 2026-05-04 08:57:00 UTC; windows
