Package: CRImage
Type: Package
Title: CRImage a package to classify cells and calculate tumour
        cellularity
Version: 1.60.0
Date: 2012-10-01
Author: Henrik Failmezger <failmezger@mpipz.mpg.de>, Yinyin Yuan
        <Yinyin.Yuan@cancer.org.uk>, Oscar Rueda
        <oscar.rueda@cancer.org.uk>, Florian Markowetz
        <Florian.Markowetz@cancer.org.uk>
Maintainer: Henrik Failmezger <failmezger@mpipz.mpg.de>, Yinyin Yuan
 <Yinyin.Yuan@cancer.org.uk>
Description: CRImage provides functionality to process and analyze
        images, in particular to classify cells in biological images.
        Furthermore, in the context of tumor images, it provides
        functionality to calculate tumour cellularity.
License: Artistic-2.0
LazyLoad: yes
Imports: MASS, e1071, foreach, sgeostat
Depends: EBImage, DNAcopy, aCGH
Collate: plotCorrectedCN.R correctCopyNumber.R writeDensityImage.R
        convertRGBToHSV.R convertHSVToRGB.R imageCompression.R
        createBinaryImage.R colorCorrection.R searchStructures.R
        segmentStructures.R classifyStructures.R numberOfNeighbors.R
        segmentCytoplasma.R segmentImage.R createClassifier.R
        kernelSmoother.R paintCells.R classifyCells.R
        determineCellularity.R calculateCellularity.R findSlices.R
        parseFinalScan.R classificationAperio.R processAperio.R
        Phansalkar_threshold.R SauvolaThreshold.R
        calculateMeanStdTarget.R convertLABToRGB.R convertRGBToLAB.R
        localORThreshold.R oregonThreshold.R localThreshold.R
        calculateOtsu.R classifyPen.R getImageDistance.R hist3d.R
        labelCells.R plotImage.R
biocViews: CellBiology, Classification
Packaged: 2026-04-29 20:46:08 UTC; root
Config/pak/sysreqs: cmake libfftw3-dev make libjpeg-dev libpng-dev
        libtiff-dev libuv1-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:34:54 UTC
RemoteUrl: https://github.com/bioc/CRImage
RemoteRef: RELEASE_3_23
RemoteSha: 327f9f11e30208a236588431828b639189712978
NeedsCompilation: no
Built: R 4.6.0; ; 2026-04-29 20:49:28 UTC; windows
