# Data companion to CTexploreR

## Documentation for package ‘CTdata’ version 1.12.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

all_genes | All genes genes description table
CCLE_correlation_matrix | Gene correlations in CCLE cancer cell lines
CCLE_data | Genes expression data in CCLE
CTdata | All CTdata datasets
CT_genes | CT genes description table
CT_mean_methylation_in_tissues | CT genes' promoters mean methylation
CT_methylation_in_tissues | Methylation of CpGs within CT promoters
DAC_treated_cells | DE genes with/without demethylating agent
DAC_treated_cells_multimapping | DE genes treated or not with a demethylating agent
embryo_sce_Petropoulos | Embryo scRNAseq
embryo_sce_Zhu | Embryo scRNAseq
FGC_sce | Fetal gonad scRNAseq
GTEX_data | Genes expression in GTEX
hESC_data | Genes expression in hESC
HPA_cell_type_specificities | Cell type specificities (from HPA)
makeTags | A short function that returns the default CTdata tags and, if provided, additional data-specific tags.
mean_methylation_in_embryo | All genes' promoters mean methylation in embryos
mean_methylation_in_FGC | All genes' promoters mean methylation in FGC
mean_methylation_in_hESC | All genes' promoters mean methylation in hESC
mean_methylation_in_tissues | All genes' promoters mean methylation
methylation_in_embryo | Methylation of CpGs within all genes promoters in embryo
methylation_in_FGC | Methylation of CpGs within all genes promoters in FGC
methylation_in_hESC | Methylation of CpGs within all genes promoters in hESC
methylation_in_tissues | Methylation of CpGs within all genes promoters
normal_tissues_multimapping_data | Gene expression values in normal tissues
oocytes_sce | Oocytes scRNAseq
scRNAseq_HPA | Gene expression in human cell types
TCGA_CT_methylation | Methylation of CT promoters in TCGA samples
TCGA_methylation | Methylation of all genes promoters in TCGA samples
TCGA_TPM | Gene expression in TCGA samples
testis_sce | Testis scRNAseq data