Package: CTexploreR
Title: Explores Cancer Testis Genes
Version: 1.8.0
Authors@R: 
    c(person(given = "Axelle",
           family = "Loriot",
           role = c("aut", "cre"),
           email = "axelle.loriot@uclouvain.be",
                 comment = c(ORCID = "0000-0002-5288-8561")),
      person(given = "Julie",
           family = "Devis",
           role = "aut",
           email = "julie.devis@uclouvain.be",
           comment = c(ORCID = "0000-0001-5525-5666")),
      person(given = "Anna",
           family = "Diacofotaki",
           role = "ctb",
           email = "anna.diacofotaki@uclouvain.be"),
      person(given = "Charles",
           family = "De Smet",
           role = "ths",
           email = "charles.desmet@uclouvain.be"),
      person(given = "Laurent",
           family = "Gatto",
           role = c("aut","ths"),
           email = "laurent.gatto@uclouvain.be",
           comment = c(ORCID = "0000-0002-1520-2268")))
Description: The CTexploreR package re-defines the list of Cancer
        Testis/Germline (CT) genes. It is based on publicly available
        RNAseq databases (GTEx, CCLE and TCGA) and summarises CT genes'
        main characteristics. Several visualisation functions allow to
        explore their expression in different types of tissues and
        cancer cells, or to inspect the methylation status of their
        promoters in normal tissues.
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends: R (>= 4.3), CTdata (>= 1.5.3)
Imports: BiocGenerics, ComplexHeatmap, grid, SummarizedExperiment,
        GenomicRanges, IRanges, dplyr, tidyr, tibble, ggplot2, rlang,
        grDevices, stats, circlize, ggrepel, SingleCellExperiment,
        MatrixGenerics
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0),
        InteractiveComplexHeatmap
biocViews: Transcriptomics, Epigenetics, DifferentialExpression,
        GeneExpression, DNAMethylation, ExperimentHubSoftware,
        DataImport
VignetteBuilder: knitr
URL: https://github.com/UCLouvain-CBIO/CTexploreR
BugReports: https://github.com/UCLouvain-CBIO/CTexploreR/issues
Config/testthat/edition: 3
Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev perl zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 13:02:00 UTC
RemoteUrl: https://github.com/bioc/CTexploreR
RemoteRef: RELEASE_3_23
RemoteSha: 17f6c3d4485df49a9a51fbebbfd0cbb9e3a7a01c
NeedsCompilation: no
Packaged: 2026-04-30 10:20:20 UTC; root
Author: Axelle Loriot [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-5288-8561>),
  Julie Devis [aut] (ORCID: <https://orcid.org/0000-0001-5525-5666>),
  Anna Diacofotaki [ctb],
  Charles De Smet [ths],
  Laurent Gatto [aut, ths] (ORCID:
    <https://orcid.org/0000-0002-1520-2268>)
Maintainer: Axelle Loriot <axelle.loriot@uclouvain.be>
Built: R 4.6.0; ; 2026-04-30 10:22:28 UTC; windows
