# An effective identification of alternative splicing events using junction arrays and RNA-Seq data

## Documentation for package ‘EventPointer’ version 3.20.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

AllEvents_RNASeq | Alternative splicing events detected by EventPointer
AllEvents_RNASeq_MP | Alternative splicing multi-path events detected by EventPointer
ArrayDatamultipath | Preprocessed arrays data with multi-path events
ArraysData | Preprocessed arrays data
CDFfromGTF | CDF file creation for EventPointer
CDFfromGTF_Multipath | CDF file creation for EventPointer (MultiPath)
CreateExSmatrix | Events X RBPS matrix creation
EventDetection | Detect splicing events using EventPointer methodology
EventDetectionAnn | Detect splicing events using EventPointer methodology
EventDetectionMultipath | Detect splicing multipath events using EventPointer methodology
EventDetection_transcriptome | EventDetection_transcriptome
EventPointer | EventPointer
EventPointerBAM_IGV | EventPointer RNASeq IGV Visualization
EventPointerStats_BAM | Statistical analysis of alternative splicing events from BAM files
EventPointer_Bootstraps | EventPointer_Bootstraps
EventPointer_IGV | EventPointer IGV Visualization
EventPointer_RNASeq | Statistical analysis of alternative splcing events for RNASeq data
EventPointer_RNASeq_TranRef | EventPointer_RNASeq_TranRef
EventPointer_RNASeq_TranRef_IGV | EventPointer RNASeq from reference transcriptome IGV Visualization
EventsDetection_BAM | Detection of alternative splicing events from BAM alignment files
Events_ReClassification | Events_ReClassification
EventXtrans | Relationship between isoforms and events.
FindPrimers | FindPrimers
Fit | Result of EventPointer_Bootstrap
getbootstrapdata | getbootstrapdata
GetPSI_FromTranRef | GetPSI_FromTranRef
getPSI_RNASeq_boot | getPSI_RNASeq_boot
MyPrimers | Data frame with primers design for conventional PCR
MyPrimers_taqman | Data frame with primers design for taqman PCR
PrepareBam_EP | Bam files preparation for EventPointer
Protein_Domain_Enrichment | Protein_Domain_Enrichment
PSIss | relationship between isoforms and events
PSI_boots | Bootstrap PSI values from BAM files
PSI_Statistic | PSI_Statistic
ResulTable | ResulTable
SF_Prediction | Splicing Factor Prediction
SG_reclassify | Splicing graph example for Events_ReClassification function
SG_RNASeq | Splicing graph elements predicted from BAM files
TxD | Transcript x Protein Domain matrix: small matrix for examples