# Make Biological Sense of Gene Set Enrichment Analysis Outputs

## Documentation for package ‘GSEAmining’ version 1.22.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

clust_groups | clust_groups
clust_group_cores | clust_group_cores
clust_group_terms | clust_group_terms
genesets_sel | Selected gene sets as test
gm_clust | gm_clust: GSEAmining cluster object
gm_dendplot | gm_dendplot: GSEAmining dendrogram plotter
gm_enrichcores | gm_enrichcores: GSEAmining core enrichment genes
gm_enrichreport | gm_enrichreport: GSEAmining Enrichment Report
gm_enrichterms | gm_enrichterms: GSEAmining enriched terms
gm_filter | gm_filter: GSEAmining GSEA output filter
stop_words | Stop words. Eliminates the first word of the gene sets from MSigDb that relate to the origin of the gene set. Additionally it eliminates words that do not add a lot of significance such as prepositions or adverbs among others.