Package: InterCellar
Title: InterCellar: an R-Shiny app for interactive analysis and
        exploration of cell-cell communication in single-cell
        transcriptomics
Version: 2.18.0
Authors@R: person('Marta', 'Interlandi', email = 'marta.interlandi01@gmail.com', role = c('cre', 'aut'), comment = c(ORCID = "0000-0002-6863-2552") )
Description: InterCellar is implemented as an R/Bioconductor Package
        containing a Shiny app that allows users to interactively
        analyze cell-cell communication from scRNA-seq data. Starting
        from precomputed ligand-receptor interactions, InterCellar
        provides filtering options, annotations and multiple
        visualizations to explore clusters, genes and functions.
        Finally, based on functional annotation from Gene Ontology and
        pathway databases, InterCellar implements data-driven analyses
        to investigate cell-cell communication in one or multiple
        conditions.
License: MIT + file LICENSE
Imports: config, golem, shiny, DT, shinydashboard, shinyFiles,
        shinycssloaders, data.table, fs, dplyr, tidyr, circlize,
        colourpicker, dendextend, factoextra, ggplot2, plotly, plyr,
        shinyFeedback, shinyalert, tibble, umap, visNetwork,
        wordcloud2, readxl, htmlwidgets, colorspace, signal, scales,
        htmltools, ComplexHeatmap, grDevices, stats, tools, utils,
        biomaRt, rlang, fmsb, igraph
Encoding: UTF-8
RoxygenNote: 7.1.1
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, glue, graphite,
        processx, attempt, BiocStyle, httr
Config/testthat/edition: 3
URL: https://github.com/martaint/InterCellar
BugReports: https://github.com/martaint/InterCellar/issues
VignetteBuilder: knitr
biocViews: Software, SingleCell, Visualization, GO, Transcriptomics
Depends: R (>= 4.1)
PackageStatus: Deprecated
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev perl python3 zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:55:15 UTC
RemoteUrl: https://github.com/bioc/InterCellar
RemoteRef: RELEASE_3_23
RemoteSha: 12f9c0602a959c0e338b16dd3adb128ee7924a60
NeedsCompilation: no
Packaged: 2026-04-29 22:26:41 UTC; root
Author: Marta Interlandi [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-6863-2552>)
Maintainer: Marta Interlandi <marta.interlandi01@gmail.com>
Built: R 4.6.0; ; 2026-04-29 22:28:40 UTC; windows
