Package: MEAL
Title: Perform methylation analysis
Version: 1.42.0
Authors@R: c(person("Carlos", "Ruiz-Arenas", , "carlos.ruiz@isglobal.org", role = c("aut", "cre")),
  person("Juan R.", "Gonzalez", ,"juanr.gonzalez@isglobal.org", role = "aut"))
Maintainer: Xavier Escribà Montagut <xavier.escriba@isglobal.org>
Description: Package to integrate methylation and expression data. It
        can also perform methylation or expression analysis alone.
        Several plotting functionalities are included as well as a new
        region analysis based on redundancy analysis. Effect of SNPs on
        a region can also be estimated.
Depends: R (>= 3.6.0), Biobase, MultiDataSet
License: Artistic-2.0
biocViews: DNAMethylation, Microarray, Software, WholeGenome
Imports: GenomicRanges, limma, vegan, BiocGenerics, minfi, IRanges,
        S4Vectors, methods, parallel, ggplot2 (>= 2.0.0), permute,
        Gviz, missMethyl, isva, SummarizedExperiment, SmartSVA,
        graphics, stats, utils, matrixStats
Suggests: testthat, IlluminaHumanMethylationEPICanno.ilm10b2.hg19,
        IlluminaHumanMethylation450kanno.ilmn12.hg19, knitr, minfiData,
        BiocStyle, rmarkdown, brgedata
VignetteBuilder: knitr
RoxygenNote: 7.1.1
Encoding: UTF-8
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev libjpeg-dev
        liblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev
        libx11-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:41:59 UTC
RemoteUrl: https://github.com/bioc/MEAL
RemoteRef: RELEASE_3_23
RemoteSha: e8a5d6aa283902ea842d5b75c1fec6cebfde38e1
NeedsCompilation: no
Packaged: 2026-05-04 09:35:46 UTC; root
Author: Carlos Ruiz-Arenas [aut, cre],
  Juan R. Gonzalez [aut]
Built: R 4.6.0; ; 2026-05-04 09:54:39 UTC; windows
