# Generated by roxygen2: do not edit by hand

export(BSBinAggregate)
export(BSreadBiSeq)
export(SummarizedExperimentToDataTable)
export(addMethPropCol)
export(aggregateMethyl)
export(binRegion)
export(bsseqToDataTable)
export(calcMIRAScore)
export(plotMIRAProfiles)
export(plotMIRAScores)
export(rbindNamedList)
import(BiocGenerics)
import(IRanges)
import(S4Vectors)
importFrom(Biobase,sampleNames)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,elementMetadata)
importFrom(GenomicRanges,granges)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,strand)
importFrom(bsseq,getCoverage)
importFrom(bsseq,getMeth)
importFrom(data.table,":=")
importFrom(data.table,copy)
importFrom(data.table,data.table)
importFrom(data.table,fread)
importFrom(data.table,is.data.table)
importFrom(data.table,rbindlist)
importFrom(data.table,setDT)
importFrom(data.table,setattr)
importFrom(data.table,setcolorder)
importFrom(data.table,setkey)
importFrom(data.table,setnames)
importFrom(data.table,setorder)
importFrom(ggplot2,aes)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,scale_color_brewer)
importFrom(ggplot2,scale_color_discrete)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_brewer)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(methods,is)
importFrom(stats,coefficients)
importFrom(stats,lm)
importFrom(stats,poly)
