# Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies

## Documentation for package ‘MMUPHin’ version 2.0.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

adjust_batch | Zero-inflated empirical Bayes adjustment of batch effect in compositional feature abundance data
continuous_discover | Unsupervised meta-analytical discovery and validation of continuous structures in microbial abundance data
CRC_abd | Species level feature abundance data of five public CRC studies
CRC_meta | Sample metadata of five public CRC studies
discrete_discover | Unsupervised meta-analytical discovery and validation of discrete clustering structures in microbial abundance data
maaslin_meta | maaslin3-based meta-analytical differential abundance testing
vaginal_abd | Species level feature abundance data of two public vaginal studies
vaginal_meta | Sample metadata of two public vaginal studies