NanoMethViz-package	NanoMethViz-package
assert_valid_exons	assert_valid_exons
assert_valid_genomic_coords	assert_valid_genomic_coords
assert_valid_methy_samples	assert_valid_methy_samples
assert_valid_samples	assert_valid_samples
bsseq_to_edger	bsseq_to_edger
bsseq_to_log_methy_ratio	bsseq_to_log_methy_ratio
cluster_reads	cluster_reads
cluster_regions	cluster_regions
convert_methy_format	convert_methy_format
create_tabix_file	create_tabix_file
exons	exons
exons,ModBamResult-method	ModBamResult-class
exons,NanoMethResult-method	NanoMethResult-class
exons<-	exons-set
exons<-,ModBamResult,data.frame-method	ModBamResult-class
exons<-,NanoMethResult,data.frame-method	NanoMethResult-class
exons_to_genes	exons_to_genes
filter_methy	filter_methy
get_cgi	get_cgi
get_cgi_grcm39	get_exons
get_cgi_hg19	get_exons
get_cgi_hg38	get_exons
get_cgi_mm10	get_exons
get_cgi_t2t	get_exons
get_example_exons_mus_musculus	get_example_exons_mus_musculus
get_exons	get_exons
get_exons_grcm39	get_exons
get_exons_hg19	get_exons
get_exons_hg38	get_exons
get_exons_homo_sapiens	get_exons_homo_sapiens
get_exons_mm10	get_exons
get_exons_mus_musculus	get_exons_mus_musculus
get_exons_t2t	get_exons
load_example_modbamresult	load_example_modbamresult
load_example_nanomethresult	load_example_nanomethresult
methy	methy
methy,ModBamResult-method	ModBamResult-class
methy,NanoMethResult-method	NanoMethResult-class
methy<-	methy-set
methy<-,ModBamResult,ModBamFiles-method	ModBamResult-class
methy<-,NanoMethResult,ANY-method	NanoMethResult-class
methy_col_names	methy_col_names
methy_to_bsseq	methy_to_bsseq
methy_to_edger	methy_to_edger
ModBamFiles	ModBamFiles
ModBamFiles-class	ModBamFiles-class
ModBamResult	ModBamResult-class
ModBamResult-class	ModBamResult-class
modbam_to_tabix	modbam_to_tabix
mod_code	mod_code
mod_code,ModBamResult-method	ModBamResult-class
mod_code<-	mod_code-set
mod_code<-,ModBamResult,character-method	ModBamResult-class
NanoMethResult	NanoMethResult-class
NanoMethResult-class	NanoMethResult-class
NanoMethViz	NanoMethViz-package
plot_agg_genes	plot_agg_genes
plot_agg_regions	plot_agg_regions
plot_gene	plot_gene
plot_gene,ModBamResult,character-method	plot_gene
plot_gene,NanoMethResult,character-method	plot_gene
plot_gene_heatmap	plot_gene_heatmap
plot_gene_heatmap,ModBamResult,character-method	plot_gene_heatmap
plot_gene_heatmap,NanoMethResult,character-method	plot_gene_heatmap
plot_grange	plot_grange
plot_grange_heatmap	plot_grange_heatmap
plot_mds	plot_mds
plot_pca	plot_pca
plot_region	plot_region
plot_region,ModBamResult,character,numeric,numeric-method	plot_region
plot_region,ModBamResult,factor,numeric,numeric-method	plot_region
plot_region,NanoMethResult,character,numeric,numeric-method	plot_region
plot_region,NanoMethResult,factor,numeric,numeric-method	plot_region
plot_region_heatmap	plot_region_heatmap
plot_region_heatmap,ModBamResult,character,numeric,numeric-method	plot_region_heatmap
plot_region_heatmap,ModBamResult,factor,numeric,numeric-method	plot_region_heatmap
plot_region_heatmap,NanoMethResult,character,numeric,numeric-method	plot_region_heatmap
plot_region_heatmap,NanoMethResult,factor,numeric,numeric-method	plot_region_heatmap
plot_violin	plot_violin
query_exons	query_exons
query_exons_gene_id	query_exons
query_exons_region	query_exons
query_exons_symbol	query_exons
query_methy	query_methy
raw_methy_to_tabix	raw_methy_to_tabix
reexports	reexports
region_methy_stats	region_methy_stats
samples	samples
samples,ModBamResult-method	ModBamResult-class
samples,NanoMethResult-method	NanoMethResult-class
samples<-	samples-set
samples<-,ModBamResult,data.frame-method	ModBamResult-class
samples<-,NanoMethResult,data.frame-method	NanoMethResult-class
show,ModBamFiles-method	ModBamFiles
sigmoid	reexports
sort_methy_file	sort_methy_file
