Package: Rbowtie2
Type: Package
Title: An R Wrapper for Bowtie2 and AdapterRemoval
Version: 2.18.0
Date: 2021-10-5
Authors@R: 
    c(person(given = "Zheng", family = "Wei", role = c("aut","cre"), 
            email = "wzweizheng@qq.com"),
    person(given = "Wei", family = "Zhang", role = c("aut"), 
            email = " weizhang0505@126.com"))
Description: This package provides an R wrapper of the popular bowtie2
        sequencing reads aligner and AdapterRemoval, a convenient tool
        for rapid adapter trimming, identification, and read merging.
        The package contains wrapper functions that allow for genome
        indexing and alignment to those indexes. The package also
        allows for the creation of .bam files via Rsamtools.
License: GPL (>= 3)
Depends: R (>= 4.1.0)
Encoding: UTF-8
Suggests: knitr, testthat (>= 3.0.0), rmarkdown
Imports: magrittr, Rsamtools
SystemRequirements: C++11, GNU make, samtools
Archs: x64
RoxygenNote: 7.1.1
biocViews: Sequencing, Alignment, Preprocessing
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: make libbz2-dev liblzma-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:46:19 UTC
RemoteUrl: https://github.com/bioc/Rbowtie2
RemoteRef: RELEASE_3_23
RemoteSha: 9ab99b568469fc9c37764e2d20bbcbb57b6ffc77
NeedsCompilation: yes
Packaged: 2026-04-29 13:53:21 UTC; root
Author: Zheng Wei [aut, cre],
  Wei Zhang [aut]
Maintainer: Zheng Wei <wzweizheng@qq.com>
Built: R 4.6.0; x86_64-w64-mingw32; 2026-04-29 13:58:18 UTC; windows
