Package: SeqVarTools
Version: 1.50.0
Type: Package
Title: Tools for variant data
Description: An interface to the fast-access storage format for VCF
        data provided in SeqArray, with tools for common operations and
        analysis.
Author: Stephanie M. Gogarten, Xiuwen Zheng, Adrienne Stilp
Maintainer: Stephanie M. Gogarten <sdmorris@uw.edu>
Depends: SeqArray
Imports: grDevices, graphics, stats, methods, Biobase, BiocGenerics,
        gdsfmt, GenomicRanges, IRanges, S4Vectors, GWASExactHW,
        logistf, Matrix, data.table,
Suggests: BiocStyle, RUnit, stringr
License: GPL-3
URL: https://github.com/smgogarten/SeqVarTools
LazyData: yes
biocViews: SNP, GeneticVariability, Sequencing, Genetics
Collate: AllClasses.R AllGenerics.R AllUtilities.R
        Methods-SeqVarGDSClass.R Methods-SeqVarData.R
        Methods-Iterator.R chromWithPAR.R duplicateDiscordance.R hwe.R
        inbreedCoeff.R mendelErr.R pca.R setVariantID.R
        alternateAlleleDetection.R refFrac.R regression.R
Config/pak/sysreqs: cmake make libicu-dev libx11-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:38:02 UTC
RemoteUrl: https://github.com/bioc/SeqVarTools
RemoteRef: RELEASE_3_23
RemoteSha: 42d658efd0f0e854582a262c976c7ef24924b6bf
NeedsCompilation: no
Packaged: 2026-04-29 16:30:08 UTC; root
Built: R 4.6.0; ; 2026-04-29 16:32:14 UTC; windows
