# Generated by roxygen2: do not edit by hand

export(calculate_gene_scores_directed)
export(calculate_gene_set_score)
export(calculate_gene_set_specificity)
export(calculate_influence)
export(calculate_lr_scores)
export(calculate_overlap_directed)
export(calculate_overlap_undirected)
export(calculate_thresholds)
export(find_all_hotspots)
export(find_hotspots_gmm)
export(find_pattern_hotspots)
export(get_im_scores)
export(get_interacting_genes)
export(get_pairwise_interacting_genes)
export(get_spatial_features)
export(get_spatial_parameters)
export(get_spatial_params_morans_i)
export(load10XCoords)
export(load10XExpr)
export(plot_cell_interaction_circos)
export(plot_im_scores)
export(plot_overlap_scores)
export(plot_source_to_target_circos)
export(plot_spatial_data_over_image)
export(plot_target_from_sources_circos)
import(RColorBrewer)
import(circlize)
import(ggplot2)
importFrom(Matrix,sparseMatrix)
importFrom(RColorBrewer,brewer.pal)
importFrom(ape,Moran.I)
importFrom(dplyr,mutate)
importFrom(dplyr,rename)
importFrom(effsize,cohen.d)
importFrom(ggplot2,aes)
importFrom(ggplot2,annotation_raster)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_minimal)
importFrom(hdf5r,h5file)
importFrom(jsonlite,read_json)
importFrom(matrixStats,count)
importFrom(matrixTests,row_kruskalwallis)
importFrom(methods,slot)
importFrom(mixtools,normalmixEM)
importFrom(nanoparquet,read_parquet)
importFrom(qvalue,qvalue)
importFrom(readbitmap,read.bitmap)
importFrom(reshape2,melt)
importFrom(rlang,sym)
importFrom(rstatix,filter)
importFrom(spatstat.explore,Smooth)
importFrom(spatstat.geom,marks)
importFrom(spatstat.geom,owin)
importFrom(spatstat.geom,ppp)
importFrom(stats,complete.cases)
importFrom(stats,dist)
importFrom(stats,lag)
importFrom(stats,na.omit)
importFrom(stats,pnorm)
importFrom(stats,reorder)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,t.test)
importFrom(utils,head)
importFrom(utils,read.csv)
importFrom(viridis,scale_fill_viridis)
