# TADCompare: Identification and characterization of differential TADs

## Documentation for package ‘TADCompare’ version 1.22.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

ConsensusTADs | Consensus boundary identification
DiffPlot | Visualization of differential TAD boundaries
GM12878.40kb.raw.chr2 | A subset of chomosome 2 contact matrix, GM12878 cell line.
IMR90.40kb.raw.chr2 | A subset of chomosome 2 contact matrix, IMR90 cell line.
rao_chr22_prim | Chromosome 22 combined intrachromosomal primary contact matrix from Rao et al. 2014.
rao_chr22_rep | Chromosome 22 combined intrachromosomal replicate contact matrix from Rao et al. 2014.
TADCompare | Differential TAD boundary detection
TimeCompare | Time-varying TAD boundary analysis
time_mats | Chromosome 22 time-varying contact matrices from Rao et al. 2017.