CBS_PBMC_array          An example dataset for partial reference-free
                        cell composition estimation from tissue gene
                        expression
ChooseMarker            Choose cell type-specific markers from pure
                        cell type profiles or single cell data
DEVarSelect             Feature selection for reference-free
                        deconvolution using cross-cell type
                        differential analysis
GetPrior                Get prior knowledge for supported tissue types
MDeconv                 Estimate cell compoisitons via partial
                        reference-free deconvolution.
RA_100samples           An example dataset for cellular proportion
                        estimation and multiple factor design
Tsisal                  Complete Deconvolution of DNA methylation data
                        based on TOAST and SISAL
assignCellType          Align cell types when reference proportions are
                        known
beta_emp                Simulated methylation 450K array data with
                        related
cedar                   Testing cell type specific differential signals
                        for specified phenotype by considering DE/DM
                        state corrleation between cell types.
csDeconv                Improve reference-free deconvolution using
                        cross-cell type differential analysis
csTest                  Testing differential signals for specified
                        phenotype and cell type(s).
findRefinx              findRefinx
fitModel                Fit model with proportions and phenotypes.
makeDesign              Generate design matrix from input phenotypes
                        and proportions.
myRefFreeCellMix        Replicate the function RefFreeCellMix() from
                        RefFreeEWAS package
myRefFreeCellMixInitialize
                        Replicate the function
                        RefFreeCellMixInitialize() from RefFreeEWAS
                        package
myprojectMix            Replicate the function myprojectMix() from
                        RefFreeEWAS package
plotCorr                Show DE/DM state correlation between cell types
