# Diagnostic Plots to Evaluate the Target Decoy Approach

## Documentation for package ‘TargetDecoy’ version 1.18.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

createPPlotObjects | Create all the PP plots in one figure for scores from multiple objects
createPPlotScores | Evaluate assumptions of the Target Decoys Approach for multiple search engines
decoyScoreTable | Prepare score table for decoys
evalTargetDecoys | Evaluate assumptions of the Target Decoys approach
evalTargetDecoysHist | Evaluate assumptions of the Target Decoys approach
evalTargetDecoysPPPlot | Evaluate assumptions of the Target Decoys approach
ModSwiss | Swiss-Prot MS-GF+ data
ModSwissXT | Swiss-Prot X!Tandem data