addKnowledge	addKnowledge
areaCAT	areaCAT
CAT	CAT
checkNormalization	checkNormalization
createColors	createColors
createConcordance	createConcordance
createEnrichment	createEnrichment
createMocks	createMocks
createPositives	createPositives
createSplits	createSplits
createTIEC	createTIEC
DA_ALDEx2	DA_ALDEx2
DA_ANCOM	DA_ANCOM
DA_basic	DA_basic
DA_corncob	DA_corncob
DA_dearseq	DA_dearseq
DA_DESeq2	DA_DESeq2
DA_edgeR	DA_edgeR
DA_limma	DA_limma
DA_linda	DA_linda
DA_Maaslin2	DA_Maaslin2
DA_maaslin3	DA_maaslin3
DA_MAST	DA_MAST
DA_metagenomeSeq	DA_metagenomeSeq
DA_mixMC	DA_mixMC
DA_NOISeq	DA_NOISeq
DA_Seurat	DA_Seurat
DA_ZicoSeq	DA_ZicoSeq
enrichmentTest	enrichmentTest
extractDA	extractDA
extractStatistics	extractStatistics
fitDM	fitDM
fitHURDLE	fitHURDLE
fitModels	fitModels
fitNB	fitNB
fitZIG	fitZIG
fitZINB	fitZINB
getDA	getDA
getPositives	getPositives
getStatistics	getStatistics
get_counts_metadata	get_counts_metadata
iterative_ordering	iterative_ordering
meanDifferences	meanDifferences
microbial_metabolism	microbial_metabolism
norm_CSS	norm_CSS
norm_DESeq2	norm_DESeq2
norm_edgeR	norm_edgeR
norm_TSS	norm_TSS
plotConcordance	plotConcordance
plotConcordanceDendrogram	plotConcordanceDendrogram
plotConcordanceHeatmap	plotConcordanceHeatmap
plotContingency	plotContingency
plotEnrichment	plotEnrichment
plotFDR	plotFDR
plotFPR	plotFPR
plotKS	plotKS
plotLogP	plotLogP
plotMD	plotMD
plotMutualFindings	plotMutualFindings
plotPositives	plotPositives
plotQQ	plotQQ
plotRMSE	plotRMSE
prepareObserved	prepareObserved
ps_plaque_16S	ps_plaque_16S
ps_stool_16S	ps_stool_16S
RMSE	RMSE
runDA	runDA
runMocks	runMocks
runNormalizations	runNormalizations
runSplits	runSplits
setNormalizations	setNormalizations
set_ALDEx2	set_ALDEx2
set_ANCOM	set_ANCOM
set_basic	set_basic
set_corncob	set_corncob
set_dearseq	set_dearseq
set_DESeq2	set_DESeq2
set_edgeR	set_edgeR
set_limma	set_limma
set_linda	set_linda
set_Maaslin2	set_Maaslin2
set_maaslin3	set_maaslin3
set_MAST	set_MAST
set_metagenomeSeq	set_metagenomeSeq
set_mixMC	set_mixMC
set_NOISeq	set_NOISeq
set_Seurat	set_Seurat
set_ZicoSeq	set_ZicoSeq
weights_ZINB	weights_ZINB
