Package: cbpManager
Type: Package
Title: Generate, manage, and edit data and metadata files suitable for
        the import in cBioPortal for Cancer Genomics
Version: 1.20.0
Date: 2021-03-16
Authors@R: c(
    person(given = "Arsenij", family = "Ustjanzew", email = "arsenij.ustjanzew@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-1014-4521")),
    person("Federico", "Marini", role = "aut", email = "marinif@uni-mainz.de", comment = c(ORCID = '0000-0003-3252-7758')))
Description: This R package provides an R Shiny application that
        enables the user to generate, manage, and edit data and
        metadata files suitable for the import in cBioPortal for Cancer
        Genomics. Create cancer studies and edit its metadata. Upload
        mutation data of a patient that will be concatenated to the
        data_mutation_extended.txt file of the study. Create and edit
        clinical patient data, sample data, and timeline data. Create
        custom timeline tracks for patients.
License: AGPL-3 + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.2.3
VignetteBuilder: knitr
URL: https://arsenij-ust.github.io/cbpManager/index.html
BugReports: https://github.com/arsenij-ust/cbpManager/issues
Depends: shiny, shinydashboard
Imports: utils, DT, htmltools, vroom, plyr, dplyr, magrittr, jsonlite,
        rapportools, basilisk, reticulate, shinyBS, shinycssloaders,
        rintrojs, rlang, markdown
Suggests: knitr, BiocStyle, rmarkdown, testthat (>= 3.0.0)
StagedInstall: no
Collate: 'basilisk.R' 'dynamicTable.R' 'modulesResourceButtons.R'
        'cbpManager-pkg.R' 'functions.R' 'global.R' 'cbpManager.R'
        'shinyAppServer.R' 'shinyAppUI.R'
biocViews: ImmunoOncology, DataImport, DataRepresentation, GUI,
        ThirdPartyClient, Preprocessing, Visualization
Config/testthat/edition: 3
Config/pak/sysreqs: cmake make libicu-dev libpng-dev libuv1-dev python3
        zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:56:01 UTC
RemoteUrl: https://github.com/bioc/cbpManager
RemoteRef: RELEASE_3_23
RemoteSha: 35a8689e257ef5e6b97bb8e8a1620dbb7b6558fb
NeedsCompilation: no
Packaged: 2026-04-29 20:33:52 UTC; root
Author: Arsenij Ustjanzew [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-1014-4521>),
  Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>)
Maintainer: Arsenij Ustjanzew <arsenij.ustjanzew@gmail.com>
Built: R 4.6.0; ; 2026-04-29 20:36:19 UTC; windows
