# From functional enrichment results to biological networks

## Documentation for package ‘enrichViewNet’ version 1.10.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

enrichViewNet-package | From functional enrichment results to biological networks
createEnrichMap | Using functional enrichment results in gprofiler2 format to create an enrichment map
createEnrichMapAsIgraph | Using functional enrichment results in gprofiler2 format to create an enrichment map in an igraph format
createEnrichMapMultiBasic | Using functional enrichment results in gprofiler2 format to create an enrichment map with multiple groups from different enrichment analyses
createEnrichMapMultiBasicAsIgraph | Using functional enrichment results in gprofiler2 format to create an enrichment map with multiple groups from different enrichment analyses as an igraph
createEnrichMapMultiComplex | Using functional enrichment results in gprofiler2 format to create an enrichment map with multiple groups from same or different enrichment analyses
createEnrichMapMultiComplexAsIgraph | Using functional enrichment results in gprofiler2 format to create an enrichment map with multiple groups from same or different enrichment analyses in an igraph format
createNetwork | Using functional enrichment results from gprofiler2 to create a Cytoscape network
demoGOST | The result of a functional enrichment analysis done with 'gprofiler2' (<https://cran.r-project.org/web/packages/gprofiler2/vignettes/gprofiler2.html>).
enrichViewNet | From functional enrichment results to biological networks
parentalNapaVsDMSODEG | The result of a differential expression analysis done between napabucasin treated and DMSO control parental MiaPaCa2 cells. The cells were treated for 2 hours with 0.5 uM napabucasin. The protocol to generate the RNA-seq is described in Froeling F.E.M. et al 2019.
parentalNapaVsDMSOEnrichment | The result of an enrichment analysis has been done using the significantly differentially expressed genes between napabucasin treated and DMSO control parental MiaPaCa2 cells. The cells were treated for 2 hour with 0.5 uM napabucasin. The protocol to generate the RNA-seq is described in Froeling F.E.M. et al 2019.
rosaNapaVsDMSODEG | The result of a differential expression analysis done between napabucasin treated and DMSO control MiaPaCa2 cells stably expressing the Rosa26 control vector. The cells were treated for 2 hours with 0.5 uM napabucasin. The protocol to generate the RNA-seq is described in Froeling F.E.M. et al 2019.
rosaNapaVsDMSOEnrichment | The result of an enrichment analysis that has been done using the significantly differentially expressed genes between napabucasin treated and DMSO control MiaPaCa2 cells stably expressing the Rosa26 control vector. The cells were treated for 2 hour with 0.5 uM napabucasin. The protocol to generate the RNA-seq is described in Froeling F.E.M. et al 2019.
validateCreateEnrichMapMultiComplexAsIgraphArg | Validate arguments passed to validateCreateEnrichMapMultiComplex() function