Package: flowSpecs
Version: 1.26.0
Date: 2026-03-16
Type: Package
Title: Tools for processing of high-dimensional cytometry data
biocViews: Software,CellBasedAssays,DataRepresentation,ImmunoOncology,
        FlowCytometry,SingleCell,Visualization,Normalization,DataImport
Authors@R: person('Jakob', 'Theorell', email = "jakob.theorell@ki.se",
        role = c("aut", "cre"))
Description: This package is intended to fill the role of conventional
        cytometry pre-processing software, for spectral decomposition,
        transformation, visualization and cleanup, and to aid further
        downstream analyses, such as with DepecheR, by enabling
        transformation of flowFrames and flowSets to dataframes.
        Functions for flowCore-compliant automatic 1D-gating/filtering
        are in the pipe line. The package name has been chosen both as
        it will deal with spectral cytometry and as it will hopefully
        give the user a nice pair of spectacles through which to view
        their data.
BugReports: https://github.com/jtheorell/flowSpecs/issues
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.3.2
Depends: R (>= 4.3)
Imports: ggplot2 (>= 3.1.0), BiocGenerics (>= 0.30.0), BiocParallel (>=
        1.18.1), Biobase (>= 2.48.0), reshape2 (>= 1.4.3), flowCore (>=
        1.50.0), zoo (>= 1.8.6), stats (>= 3.6.0), methods (>= 3.6.0)
Suggests: testthat, knitr, rmarkdown, BiocStyle, DepecheR
VignetteBuilder: knitr
Config/pak/sysreqs: libicu-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:50:58 UTC
RemoteUrl: https://github.com/bioc/flowSpecs
RemoteRef: RELEASE_3_23
RemoteSha: 03b6eebd261f75098e6657d2ba345f731f8d3412
NeedsCompilation: no
Packaged: 2026-04-29 21:22:01 UTC; root
Author: Jakob Theorell [aut, cre]
Maintainer: Jakob Theorell <jakob.theorell@ki.se>
Built: R 4.6.0; ; 2026-04-29 21:29:49 UTC; windows
