ISOdata                 RNA-Seq dataset example for isoforms
ISOdesign               Experimental design for ISOdata dataset example
IsoModel                Detection of genes with Isoforms with different
                        gene expression in time course experiments
IsoPlot                 Plotting the isoform profiles of a specific
                        gene by groups
NBdata                  RNA-Seq dataset example
NBdesign                Experimental design for RNA-Seq example
PlotGroups              Function for plotting gene expression profile
                        at different experimental groups
PlotProfiles            Function for visualization of gene expression
                        profiles
PodiumChange            Detection of Genes with switchs of their major
                        isoforms
T.fit                   Makes a stepwise regression fit for time series
                        gene expression experiments
average.rows            Average rows by match and index
data.abiotic            Gene expression data potato abiotic stress
edesign.abiotic         Experimental design potato abiotic stress
edesignCT               Experimental design with a shared time
edesignDR               Experimental design with different replicates
get.siggenes            Extract significant genes for sets of variables
                        in time series gene expression experiments
getDS                   Extract lists of significant isoforms from
                        Differentially Spliced Genes (DSG)
getDSPatterns           Lists of genes with Isoforms in different
                        clusters
i.rank                  Ranks a vector to index
maSigProUsersGuide      View maSigPro User's Guide
make.design.matrix      Make a design matrix for regression fit of time
                        series gene expression experiments
p.vector                Make regression fit for time series gene
                        expression experiments
position                Column position of a variable in a data frame
reg.coeffs              Calculate true variables regression
                        coefficients
see.genes               Wrapper function for visualization of gene
                        expression values of time course experiments
seeDS                   Wrapper function for visualization of
                        significant isoforms from Differentially
                        Spliced Genes
stepback                Fitting a linear model by backward-stepwise
                        regression
stepfor                 Fitting a linear model by forward-stepwise
                        regression
suma2Venn               Creates a Venn Diagram from a matrix of
                        characters
tableDS                 Identification of Mayor and minor Isoforms in
                        the clusters
two.ways.stepback       Fitting a linear model by backward-stepwise
                        regression
two.ways.stepfor        Fitting a linear model by forward-stepwise
                        regression
