Package: methylscaper
Type: Package
Title: Visualization of Methylation Data
Description: methylscaper is an R package for processing and
        visualizing data jointly profiling methylation and chromatin
        accessibility (MAPit, NOMe-seq, scNMT-seq, nanoNOMe, etc.). The
        package supports both single-cell and single-molecule data, and
        a common interface for jointly visualizing both data types
        through the generation of ordered representational
        methylation-state matrices. The Shiny app allows for an
        interactive seriation process of refinement and re-weighting
        that optimally orders the cells or DNA molecules to discover
        methylation patterns and nucleosome positioning.
Version: 1.20.0
Authors@R: c(person("Bacher", "Rhonda", email = "rbacher@ufl.edu", role = c("aut", "cre")), person("Parker", "Knight", role = c("aut")))
Depends: R (>= 4.4.0)
License: GPL-2
Encoding: UTF-8
Imports: shiny, shinyjs, seriation, BiocParallel, seqinr, Biostrings,
        pwalign, Rfast, grDevices, graphics, stats, utils, tools,
        methods, shinyFiles, data.table, SummarizedExperiment
RoxygenNote: 7.3.2
Suggests: BiocStyle, knitr, rmarkdown, devtools, R.utils
VignetteBuilder: knitr
biocViews: DNAMethylation, Epigenetics, Sequencing, Visualization,
        SingleCell, NucleosomePositioning
URL: https://github.com/rhondabacher/methylscaper/
BugReports: https://github.com/rhondabacher/methylscaper/issues
Config/pak/sysreqs: cmake make libuv1-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:55:20 UTC
RemoteUrl: https://github.com/bioc/methylscaper
RemoteRef: RELEASE_3_23
RemoteSha: dede384fe5143b7dcf059acdfda6bb3b5a163486
NeedsCompilation: no
Packaged: 2026-04-29 23:19:01 UTC; root
Author: Bacher Rhonda [aut, cre],
  Parker Knight [aut]
Maintainer: Bacher Rhonda <rbacher@ufl.edu>
Built: R 4.6.0; ; 2026-04-29 23:23:07 UTC; windows
