Package: scQTLtools
Type: Package
Title: scQTLtools: an R/Bioconductor package for comprehensive
        identification and visualization of single-cell eQTLs
Version: 1.4.0
Authors@R: c(
    person(given = "Xiaofeng", 
           family = "Wu",    
           email = "1427972815@qq.com", 
           role  = c("aut", "cre", "cph"), 
           comment = c(ORCID = "0009-0003-6254-5575")),
    person(given = "Xin",      
           family = "Huang", 
           email = "1097567240@qq.com",   
           role  = c("aut", "cph"),
           comment = c(ORCID = "0009-0005-2755-0357")),
    person(given = "Jingtong", 
           family = "Kang",  
           email = "1203178107@qq.com",     
           role = "com",
           comment = c(ORCID = "0009-0008-8343-3456")),
    person(given = "Siwen",    
           family = "Xu",    
           email = "siwxu@gdpu.edu.cn",      
           role  = c("aut", "cph"),
           comment = c(ORCID = "0000-0001-7936-0639"))
    )
Description: scQTLtools is a comprehensive R/Bioconductor package that
        facilitates end-to-end single-cell eQTL analysis, from
        preprocessing to visualization
Depends: R (>= 4.4.1.0)
Imports: ggplot2(>= 3.5.1), Matrix (>= 1.7-0), stats (>= 4.4.1),
        progress(>= 1.2.3), stringr(>= 1.5.1), dplyr(>= 1.1.4),
        SeuratObject(>= 5.0.2), methods(>= 4.4.1), magrittr(>= 2.0.3),
        patchwork(>= 1.2.0), DESeq2 (>= 1.45.3), VGAM (>= 1.1-11),
        limma (>= 3.61.9), biomaRt(>= 2.61.3), gamlss (>= 5.4-22),
        SingleCellExperiment(>= 1.27.2), SummarizedExperiment(>=
        1.32.0), yulab.utils (>= 0.2.3)
Suggests: BiocStyle, knitr, rmarkdown, org.Hs.eg.db, org.Mm.eg.db,
        org.Ce.eg.db, org.At.tair.db, testthat (>= 3.2.1.1)
License: MIT + file LICENSE
URL: https://github.com/XFWuCN/scQTLtools
VignetteBuilder: knitr
BugReports: https://github.com/XFWuCN/scQTLtools/issues
biocViews: Software, GeneExpression, GeneticVariability, SNP,
        DifferentialExpression, GenomicVariation, VariantDetection,
        Genetics, FunctionalGenomics, SystemsBiology, Regression,
        SingleCell, Normalization, Visualization, Preprocessing
Encoding: UTF-8
RoxygenNote: 7.3.2
LazyData: false
Config/testthat/edition: 3
Config/pak/sysreqs: cmake make libicu-dev libpng-dev libuv1-dev
        libxml2-dev libssl-dev zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 13:04:17 UTC
RemoteUrl: https://github.com/bioc/scQTLtools
RemoteRef: RELEASE_3_23
RemoteSha: 95ac4b708ea21872b9cfdc456e3ff5eb512f12c9
NeedsCompilation: no
Packaged: 2026-07-04 22:55:19 UTC; root
Author: Xiaofeng Wu [aut, cre, cph] (ORCID:
    <https://orcid.org/0009-0003-6254-5575>),
  Xin Huang [aut, cph] (ORCID: <https://orcid.org/0009-0005-2755-0357>),
  Jingtong Kang [com] (ORCID: <https://orcid.org/0009-0008-8343-3456>),
  Siwen Xu [aut, cph] (ORCID: <https://orcid.org/0000-0001-7936-0639>)
Maintainer: Xiaofeng Wu <1427972815@qq.com>
Built: R 4.6.1; ; 2026-07-04 22:58:10 UTC; windows
