# Top Confident Effect Sizes

## Documentation for package ‘topconfects’ version 1.28.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

confects_plot | Top confident effect sizes plot
confects_plot_me | Mean-expression vs effect size plot (deprecated)
confects_plot_me2 | Mean-expression vs effect size plot (version 2)
deseq2_confects | Confident log2 fold changes based on a DESeq2 analysis
edger_confects | Confident log2 fold change based on the edgeR Quasi-Likelihood method
limma_confects | Confident log2 fold changes based on a limma fit object
nest_confects | General purpose function to find confident effect sizes, controlling FDR
normal_confects | Confident effect sizes from from normal or t distributions
rank_rank_plot | A plot to compare two rankings