Earth Mover's Distance for Differential Analysis of Genomics Data

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Documentation for package ‘EMDomics’ version 2.39.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

emdomics-package	Earth Mover's Distance algorithm for differential analysis of genomics data.
calculate_cvm	Cramer von Mises for differential analysis of genomics data
calculate_cvm_gene	Calculate CVM score for a single gene
calculate_emd	Earth Mover's Distance for differential analysis of genomics data
calculate_emd_gene	Calculate EMD score for a single gene
calculate_ks	Calculate the Komolgorov-Smirnov test statistic and q-values for differential gene expression analysis.
calculate_ks_gene	Calculate KS score for a single gene
CVMomics	Create an CVMomics object
EMDomics	Create an EMDomics object
KSomics	Create an KSomics object
plot_cvmnull	Plot null distribution of permuted cvm scores vs. calculated cvm scores.
plot_cvmperms	Plot histogram of CVM scores calculated via random permutation.
plot_cvm_density	Plot distributions and CVM score for a gene.
plot_emdnull	Plot null distribution of permuted EMD scores vs. calculated EMD scores.
plot_emdperms	Plot histogram of EMD scores calculated via random permutation.
plot_emd_density	Plot distributions and EMD score for a gene.
plot_ksnull	Plot null distribution of permuted ks scores vs. calculated ks scores.
plot_ksperms	Plot histogram of KS scores calculated via random permutation.
plot_ks_density	Plot distributions and KS score for a gene.