Bayesian analysis of Gaussian GWAS data

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Documentation for package ‘GWAS.BAYES’ version 1.19.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

BGWAS	Performs BGWAS analysis as in the BGWAS manuscript (Williams, J., Xu, S. and Ferreira, M.A., 2023. BGWAS: Bayesian variable selection in linear mixed models with nonlocal priors for genome-wide association studies. BMC Bioinformatics, 24(1), pp.1-20.).
BICOSS	BICOSS for Gaussian Phenotypes
GINA	GINA for Gaussian Phenotypes
kinship	A. Thaliana Kinship matrix
SMA	Performs Single Marker Association tests for both Linear Mixed Models and Linear models.
SNPs	A. Thaliana Genotype matrix
Y	A. Thaliana Simulated Phenotype matrix