Independent Hypothesis Weighting

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Documentation for package ‘IHW’ version 1.37.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

adj_pvalues	An S4 class to represent the ihw output.
adj_pvalues-method	An S4 class to represent the ihw output.
alpha	An S4 class to represent the ihw output.
alpha-method	An S4 class to represent the ihw output.
as.data.frame-method	An S4 class to represent the ihw output.
as.data.frame_ihwResult	An S4 class to represent the ihw output.
covariates	An S4 class to represent the ihw output.
covariates-method	An S4 class to represent the ihw output.
covariate_type	An S4 class to represent the ihw output.
covariate_type-method	An S4 class to represent the ihw output.
get_bh_threshold	Data-driven threshold of Benjamini Hochberg Procedure
groups_by_filter	Stratify hypotheses based on increasing value of the covariate
groups_factor	An S4 class to represent the ihw output.
groups_factor-method	An S4 class to represent the ihw output.
ihw	ihw: Main function for Independent Hypothesis Weighting
ihw.default	ihw: Main function for Independent Hypothesis Weighting
ihw.DESeqResults	ihw.DESeqResults: IHW method dispatching on DESeqResults objects
ihw.formula	ihw: Main function for Independent Hypothesis Weighting
ihwResult	An S4 class to represent the ihw output.
ihwResult-class	An S4 class to represent the ihw output.
m_groups	An S4 class to represent the ihw output.
m_groups-method	An S4 class to represent the ihw output.
nbins	An S4 class to represent the ihw output.
nbins-method	An S4 class to represent the ihw output.
nfolds	An S4 class to represent the ihw output.
nfolds-method	An S4 class to represent the ihw output.
nrow-method	An S4 class to represent the ihw output.
plot-method	Plot functions for IHW
pvalues	An S4 class to represent the ihw output.
pvalues-method	An S4 class to represent the ihw output.
regularization_term	An S4 class to represent the ihw output.
regularization_term-method	An S4 class to represent the ihw output.
rejected_hypotheses	An S4 class to represent the ihw output.
rejected_hypotheses-method	An S4 class to represent the ihw output.
rejections	An S4 class to represent the ihw output.
rejections-method	An S4 class to represent the ihw output.
show-method	An S4 class to represent the ihw output.
thresholds	An S4 class to represent the ihw output.
thresholds-method	An S4 class to represent the ihw output.
weighted_pvalues	An S4 class to represent the ihw output.
weighted_pvalues-method	An S4 class to represent the ihw output.
weights-method	An S4 class to represent the ihw output.