Network Seriation And Modularization

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Documentation for package ‘NetSAM’ version 1.49.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

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NetSAM-package	Network Seriation and Modularization
consensusNet	Construction of a consensus coexpression network
featureAssociation	Calculate the associations between modules and sample features
GOAssociation	Identify the associated GO terms for each module
mapToSymbol	Map other ids to gene symbols
MatNet	Construction of correlation network from a matrix
MatSAM	Correlation network construction, seriation and modularization from a matrix
mergeDuplicate	Merge the duplicate Ids in the matrix data
NetAnalyzer	Network analyzer
NetSAM	Network Seriation and Modularization
netsam_output	An example of the list object returned by NetSAM function
testFileFormat	Test whether the data matrix and the annotation have a correct format