PROspective Power Evaluation for RNAseq

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Documentation for package ‘PROPER’ version 1.41.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

bottomly	Some existing RNA-seq and gene expression microarray data
cheung	Some existing RNA-seq and gene expression microarray data
comparePower	Compute the power-related quantities from simulation results
estParam	estimate simulation parameters from a count table
GE.human	Some existing RNA-seq and gene expression microarray data
gilad	Some existing RNA-seq and gene expression microarray data
maqc	Some existing RNA-seq and gene expression microarray data
param	Some existing RNA-seq and gene expression microarray data
pbmc	Some existing RNA-seq and gene expression microarray data
plotAll	Plot the stratified curves for power-related quantities
plotFDcost	Plot the stratified curves for power-related quantities
plotFDR	Plot the stratified curves for power-related quantities
plotPower	Plot the stratified curves for power-related quantities
plotPowerAlpha	Plot the stratified curves for power-related quantities
plotPowerFD	Plot the stratified curves for power-related quantities
plotPowerHist	Plot the histogram of power
plotPowerTD	Plot the stratified curves for power-related quantities
power.seqDepth	Estimate the marginal power under different sequencing depth
RNAseq.SimOptions.2grp	Set up options for simulating RNA-seq data in two-group comparison.
runSims	Run a number of RNA-seq simulations and DE detections
simRNAseq	Simulate RNA-seq count data
summaryPower	Generate a summary table for power analysis result