Interactive visualization and manipulation of nested networks
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Documentation for package ‘RedeR’ version 3.5.0
Help Pages
| addEdgeBetweenContainers | Deprecated functions |
| addEdges | addEdges |
| addEdges-method | addEdges |
| addGraph | Adding 'igraph' objects to RedeR |
| addGraph-method | Adding 'igraph' objects to RedeR |
| addGraphToRedeR | Adding 'igraph' objects to RedeR |
| addLegend.color | Deprecated functions |
| addLegend.shape | Deprecated functions |
| addLegend.size | Deprecated functions |
| addLegendToRedeR | Adding graph legends to the RedeR app |
| addNodes | addNodes |
| addNodes-method | addNodes |
| att.adde | Transforming edge and vertex attributes |
| att.addv | Transforming edge and vertex attributes |
| att.mape | Deprecated functions |
| att.mapv | Transforming edge and vertex attributes |
| att.sete | Transforming edge and vertex attributes |
| att.setv | Transforming edge and vertex attributes |
| calld | Call RedeR app from R |
| calld-method | Call RedeR app from R |
| cea | Deprecated functions |
| deleteEdges | deleteEdges |
| deleteEdges-method | deleteEdges |
| deleteNodes | deleteNodes |
| deleteNodes-method | deleteNodes |
| deleteSelectedEdges | Deprecated functions |
| deleteSelectedNodes | Deprecated functions |
| Deprecated | Deprecated functions |
| deSelectEdges | Deprecated functions |
| deSelectGraph | Deprecated functions |
| deSelectNodes | Deprecated functions |
| ER.limma | Pre-processed dataset for RedeR case studies. |
| exitd | Exit the RedeR R-to-Java interface |
| exitd-method | Exit the RedeR R-to-Java interface |
| exitRedeR | Exit the RedeR R-to-Java interface |
| getContainerComponets | Deprecated functions |
| getEdgeIDs | Deprecated functions |
| getEdges | Deprecated functions |
| getGraph | Get graphs from RedeR |
| getGraph-method | Get graphs from RedeR |
| getGraphFromRedeR | Get graphs from RedeR |
| getNodeIDs | Deprecated functions |
| getNodes | Deprecated functions |
| getSourceEdgeIDs | Deprecated functions |
| getTargetEdgeIDs | Deprecated functions |
| gtoy.rm | Deprecated functions |
| hs.inter | Pre-processed igraph object for RedeR case studies. |
| mergeNodes | Deprecated functions |
| mergeOutEdges | mergeOutEdges |
| mergeOutEdges-method | mergeOutEdges |
| nesthc | Deprecated functions |
| nestNodes | nestNodes |
| nestNodes-method | nestNodes |
| ping | Ping RedeR app |
| ping-method | Ping RedeR app |
| pingRedeR | Ping RedeR app |
| RedeR-data1 | Pre-processed igraph object for RedeR case studies. |
| RedeR-data2 | Pre-processed dataset for RedeR case studies. |
| RedPort | Constructor of RedPort-class objects |
| RedPort-class | RedPort: An S4 class for RedeR graphics |
| relax | Relax |
| relax-method | Relax |
| relaxRedeR | Relax |
| resetd | Reset RedeR app |
| resetd-method | Reset RedeR app |
| resetRedeR | Reset RedeR app |
| selectAllEdges | Deprecated functions |
| selectAllNodes | Deprecated functions |
| selectEdges | selectEdges |
| selectEdges-method | selectEdges |
| selectGraph | Deprecated functions |
| selectNodes | selectNodes |
| selectNodes-method | selectNodes |
| setArrowDirection | Deprecated functions |
| startRedeR | Start RedeR app from R |
| subg | Subgraph of a graph |
| transform.attributes | Transforming edge and vertex attributes |
| updateContainerSize | Deprecated functions |
| updateCoordXY | Deprecated functions |
| updateGraph | Deprecated functions |
| updateLayoutFromRedeR | Update graph layout |
| version | Version |
| version-method | Version |