Foundation of array-like containers in Bioconductor

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Documentation for package ‘S4Arrays’ version 1.9.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

A B C D E I K L M N O R S T W misc

-- A --

abind	Combine multidimensional array-like objects
abind-method	Combine multidimensional array-like objects
acbind	Combine multidimensional array-like objects
acbind-method	Combine multidimensional array-like objects
aperm-method	ArrayGrid and ArrayViewport objects
aperm.ArbitraryArrayGrid	ArrayGrid and ArrayViewport objects
aperm.DummyArrayGrid	ArrayGrid and ArrayViewport objects
aperm.RegularArrayGrid	ArrayGrid and ArrayViewport objects
aperm2	Generalized permutation of the dimensions of an array
arbind	Combine multidimensional array-like objects
arbind-method	Combine multidimensional array-like objects
ArbitraryArrayGrid	ArrayGrid and ArrayViewport objects
ArbitraryArrayGrid-class	ArrayGrid and ArrayViewport objects
arep	Replicate array elements
arep_each	Replicate array elements
arep_each-method	Replicate array elements
arep_times	Replicate array elements
arep_times-method	Replicate array elements
Array	Array objects
array selection	Manipulation of array selections
array selections	Manipulation of array selections
Array-class	Array objects
Array-kronecker	Kronecker products on Array objects
Array-kronecker-methods	Kronecker products on Array objects
ArrayGrid	ArrayGrid and ArrayViewport objects
ArrayGrid-class	ArrayGrid and ArrayViewport objects
ArrayViewport	ArrayGrid and ArrayViewport objects
ArrayViewport-class	ArrayGrid and ArrayViewport objects
Array_kronecker	Kronecker products on Array objects
Array_kronecker-methods	Kronecker products on Array objects
array_recycling	Multidimensional array recycling
array_selection	Manipulation of array selections
array_selections	Manipulation of array selections
as.character-method	ArrayGrid and ArrayViewport objects
as.character.ArrayGrid	ArrayGrid and ArrayViewport objects
as.matrix-method	Array objects
as.matrix.Array	Array objects
as_tile	Multidimensional array recycling

-- B --

bind arrays	Combine multidimensional array-like objects
bind-arrays	Combine multidimensional array-like objects

-- C --

class:ArbitraryArrayGrid	ArrayGrid and ArrayViewport objects
class:Array	Array objects
class:ArrayGrid	ArrayGrid and ArrayViewport objects
class:ArrayViewport	ArrayGrid and ArrayViewport objects
class:DummyArrayGrid	ArrayGrid and ArrayViewport objects
class:DummyArrayViewport	ArrayGrid and ArrayViewport objects
class:RegularArrayGrid	ArrayGrid and ArrayViewport objects
class:SafeArrayViewport	ArrayGrid and ArrayViewport objects
class:tile	Multidimensional array recycling
classNameForDisplay-method	ArrayGrid and ArrayViewport objects
colsum	Compute column/row sums of a matrix-like object, for groups of rows/columns
colsum-method	Compute column/row sums of a matrix-like object, for groups of rows/columns

-- D --

dim-method	ArrayGrid and ArrayViewport objects
dims	ArrayGrid and ArrayViewport objects
dims-method	ArrayGrid and ArrayViewport objects
downsample	ArrayGrid and ArrayViewport objects
downsample-method	ArrayGrid and ArrayViewport objects
DummyArrayGrid	ArrayGrid and ArrayViewport objects
DummyArrayGrid-class	ArrayGrid and ArrayViewport objects
DummyArrayViewport	ArrayGrid and ArrayViewport objects
DummyArrayViewport-class	ArrayGrid and ArrayViewport objects

-- E --

end-method

ArrayGrid and ArrayViewport objects

-- I --

isEmpty-method	Array objects
is_sparse	Check for sparse representation
is_sparse-method	Check for sparse representation
is_sparse<-	Check for sparse representation

-- K --

kronecker	Kronecker products on Array objects
kronecker-method	Kronecker products on Array objects
kronecker2	Kronecker products on Array objects

-- L --

L-index	Manipulation of array selections
length-method	Array objects
lengths-method	ArrayGrid and ArrayViewport objects
Lindex	Manipulation of array selections
Lindex2Mindex	Manipulation of array selections

-- M --

M-index	Manipulation of array selections
makeNindexFromArrayViewport	ArrayGrid and ArrayViewport objects
maxlength	ArrayGrid and ArrayViewport objects
maxlength-method	ArrayGrid and ArrayViewport objects
Mindex	Manipulation of array selections
Mindex2Lindex	Manipulation of array selections

-- N --

N-index	Manipulation of array selections
Nindex	Manipulation of array selections

-- O --

Ops-method

Multidimensional array recycling

-- R --

ranges-method	ArrayGrid and ArrayViewport objects
read_block	Read array blocks
read_block_as_dense	Read array blocks
read_block_as_dense-method	Read array blocks
refdim	ArrayGrid and ArrayViewport objects
refdim-method	ArrayGrid and ArrayViewport objects
RegularArrayGrid	ArrayGrid and ArrayViewport objects
RegularArrayGrid-class	ArrayGrid and ArrayViewport objects
rowsum	Compute column/row sums of a matrix-like object, for groups of rows/columns

-- S --

SafeArrayViewport	ArrayGrid and ArrayViewport objects
SafeArrayViewport-class	ArrayGrid and ArrayViewport objects
show-method	ArrayGrid and ArrayViewport objects
showAsCell-method	Array objects
start-method	ArrayGrid and ArrayViewport objects

-- T --

t-method	Array objects
t.Array	Array objects
tile	Multidimensional array recycling
tile-class	Multidimensional array recycling
type	Get the type of the elements of an array-like object
type-method	Get the type of the elements of an array-like object

-- W --

width-method	ArrayGrid and ArrayViewport objects
write_block	Write array blocks
write_block-method	Write array blocks

-- misc --

[[-method

Array objects