Condition specific detection from expression data

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Documentation for package ‘SpeCond’ version 1.63.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

createParameterMatrix	Create or Modify the SpeCond argument parameters
expressionSpeCondExample	The expression matrix example used in the SpeCond package
expSetSpeCondExample	An ExpressionSet example object used in the SpeCond package
fitNoPriorWithExclusion	Fit the expression values profile with a mixture of normal components ignoring outliers
fitPrior	Fit the expression value profiles with a mixture of normal components
getDefaultParameter	Get the default parameter to use SpeCond function
getFullHtmlSpeCondResult	Visualisation function of the SpeCond analysis results
getGeneHtmlPage	Visualise for each gene the condition-specific detection result from SpeCond
getMatrixFromExpressionSet	Obtain the expression matrix from an ExpressionSet object
getProfile	Create the condition-specific profile of specific matrix result from SpeCond
getSpecificOutliersStep1	Detect the condition-specific as outliers in for the first step on the SpeCond procedure
getSpecificResult	Detect the condition-specific genes for the second step on the SpeCond procedure
simulatedSpeCondData	An example of simulated expression matrix used in the SpeCond package
SpeCond	The condition-specific detection function
writeGeneResult	Write a condition-specific analysis result text file
writeSpeCondResult	Write in text files the main result of the SpeCond function
writeUniqueProfileSpecificResult	Write the specific profiles from the SpeCond analysis