Breakpoint analysis of time-course expression data
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Documentation for package ‘Trendy’ version 1.31.0
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| breakpointDist | Distribution of breakpoints |
| breakpointFit | break point fits |
| extractPattern | Extract pattern from segmented regression |
| fitSegBIC | Fit segmented regression models on a feature/gene |
| formatFunc | internal helper function to format results |
| formatResults | Function to format results for saving. |
| getCounts | getCounts |
| plotFeature | Plot features of interest |
| results | results |
| topTrendy | obtain top genes from trendy results |
| trendHeatmap | Draw heatmap of gene expression trends |
| trendy | Trendy |
| trendyExampleData | Example dataset for Trendy |
| trendyShiny | Trendy shiny app to interactively vizualize results after running trendy(). |