Estimate protein complex membership using AP-MS protein data

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Documentation for package ‘apComplex’ version 2.75.0

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adjBinFUN Computes change in LxC measure
apEX Example data set for apComplex package
apEXG Example data set for apComplex package
bhmaxSubgraph Find maximal BH-complete subgraph
findComplexes Estimate a Protein Complex Membership Graph (PCMG) using protein complex comembership data from AP-MS technology
fisherFUN Computes change in LxC measure
gavin06FilteredEstimates AP-MS data complex estimates
gavinBP2006 Tandem Affinity Purification (TAP) Data from Gavin et al. (2006)
gavinBP2006graph Tandem Affinity Purification (TAP) Data from Gavin et al. (2006)
HMSPCI High-Throughput Mass Spectromic Protein Complex Identification (HMS-PCI) Data from Ho, et al. (2002)
HMSPCIgraph High-Throughput Mass Spectromic Protein Complex Identification (HMS-PCI) Data from Ho, et al. (2002)
Krogan High-Definition Macromolecular Composition of Yeast RNA-Processing Complexes (2004)
krogan06FilteredEstimates AP-MS data complex estimates
kroganBPMat2006 Tandem Affinity Purification (TAP) Data from Krogan et al. (2006)
LCjoin Computes change in LxC measure
LCjoinadjBin Computes change in LxC measure
LCjoinfisher Computes change in LxC measure
LCjoinLchange Computes change in LxC measure
MBMEcHMSPCI HMSPCI data complex estimates
MBMEcKrogan Krogan data complex estimates
MBMEcTAP TAP data complex estimates
mergeComplexes Iteratively combine columns in initial PCMG estimate
plotComplex Render complex estimates
SBMHcHMSPCI HMSPCI data complex estimates
SBMHcTAP TAP data complex estimates
sortComplexes Sort complex estimates
TAP Tandem Affinity Purification (TAP) Data from Gavin et al. (2002)
TAPgraph Tandem Affinity Purification (TAP) Data from Gavin et al. (2002)
UnRBBcHMSPCI HMSPCI data complex estimates
UnRBBcTAP TAP data complex estimates
yNameTAP TAP data complex estimates using standard gene names
yTAP yTAP Complexes published Gavin, et al. (2002).