The GASSCO method for correcting for slide-dependent gene-specific dye bias

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Documentation for package ‘dyebias’ version 1.69.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

dyebias-package	The GASSCO method for correcting for slide-dependent gene-specific dye bias
dyebias	The GASSCO method for correcting for slide-dependent gene-specific dye bias
dyebias.application.subset	Return a subset of reporters that can be dye bias-corrected reasonably well
dyebias.apply.correction	Perform dye bias correction using the GASSCO method
dyebias.boxplot	Creates boxplots of the reporters with the strongest dye bias
dyebias.estimate.iGSDBs	Estimate intrinsic gene specific dye biases (part of the GASSCO method)
dyebias.maplot	Produce scatterplots of the hybridization, with strongest dye biases highlighted.
dyebias.monotonicity	Calculate the degree of monotonicity of the dye bias across the slides. DEPRACATED
dyebias.monotonicityplot	Show the degree of monotonicity of the dye bias across the slides. DEPRACATED
dyebias.rgplot	Produce scatterplots of the hybridization, with strongest dye biases highlighted.
dyebias.trendplot	Creates a trend-plot of all reporters, binned by dye bias, with all slides ordered by slide bias.