Seamless visualization of complex genomic variations in GMOs and
edited cell lines
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Documentation for package ‘gmoviz’ version 1.21.0
Help Pages
| bright_colours_opaque | gmoviz colour sets |
| bright_colours_transparent | gmoviz colour sets |
| colourSets | gmoviz colour sets |
| drawFeatureTrack | Add a 'feature' track to an existing plot |
| drawLinegraphTrack | Add a line graph track to an existing plot |
| drawScatterplotTrack | Add a scatterplot track to an existing plot |
| featureDiagram | Display 'features' of interest in a diagram |
| getCoverage | Import coverage data from .bam file |
| getFeatures | Generate a GRanges containing 'features' from .gff files |
| getIdeogramData | Import transgenic genome data from .bam or .fasta file |
| getLabels | Generate a GRanges of labels from .gff files |
| gmovizInitialise | Initialise the layout of the circular plot |
| gmovizPlot | Generate an entire circular plot |
| insertionDiagram | Display number of copies of an insertion |
| makeLegends | Add a legend |
| multipleInsertionDiagram | Display multiple insertion events around a genome |
| nice_colours | gmoviz colour sets |
| pastel_colours | gmoviz colour sets |
| rich_colours | gmoviz colour sets |