| affylist | List of probe ids from Affymetrix hgu133a chip and Operon Version 2 Human oligos |
| CustomEndNodeList | Reference GO nodes list. |
| EndNodeList | Reference GO nodes list. |
| getGOID | Internal goTools functions |
| getOntology | Internal goTools functions |
| goChildren | Internal goTools functions |
| goParents | Internal goTools functions |
| isEndNode | Internal goTools functions |
| ontoCompare | Wrapper functions |
| ontoCompare.main | Internal goTools functions |
| ontoPlot | Wrapper functions |
| operonlist | List of probe ids from Affymetrix hgu133a chip and Operon Version 2 Human oligos |
| parentsVectWraper | Internal goTools functions |