| kissDE-package | Retrieves condition-specific variants in RNA-seq data |
| diffExpressedVariants | Retrieve condition-specific variants in RNA-seq data |
| exploreResults | Print kissDE results in an interactive Shiny application |
| kissDE | Run the whole kissDE analysis |
| kissplice2counts | Conversion of 'KisSplice' or 'KisSplice2RefGenome' outputs |
| qualityControl | Quality control plots |
| writeOutputKissDE | Create and store the output of the 'diffExpressedVariants' function in a file and in a rds object. |