Conducts pathway test of metabolomics data using a weighted permutation test

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Documentation for package ‘metapone’ version 1.15.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

metapone-package	Conducts pathway test of metabolomics data using a weighted permutation test
bbplot1d	Plot of metapone result.
bbplot2d	Plot of metapone result.
ftable	Acessor functions for the feature mapping table in a metaponeResult object.
ftable-method	Acessor functions for the feature mapping table in a metaponeResult object.
ftable-method	Class "metaponeResult"
hmdbCompMZ	the m/z values of common adduct ions of HMDB metaboites
hmdbCompMZ.metapone	the m/z values of common adduct ions of metapone metaboites
metapone	METAbolic pathway testing using both POsitive and NEgative mode data
metaponeResult	Class "metaponeResult"
metaponeResult-class	Class "metaponeResult"
metaponeResult-method	Class "metaponeResult"
neg	Example negative mode data from the Metabolome Atlas of the Aging Mouse Brain
pa	Pathway-metabolite match file.
pos	Example positive mode data from the Metabolome Atlas of the Aging Mouse Brain
ptable	Acessor functions for the test result table in a metaponeResult object.
ptable-method	Class "metaponeResult"
ptable-method	Acessor functions for the test result table in a metaponeResult object.