Paired DGE and DGS analysis for gene set enrichment analysis
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Documentation for package ‘pairedGSEA’ version 1.9.0
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| example_diff_result | Output of running paired_diff on example_se. |
| example_gene_sets | MSigDB gene sets from humans, category C5 with ensemble gene IDs |
| example_ora_results | Output of running paired_ora on example_diff_result and gene sets extracted from MSigDB |
| example_se | A small subset of the GEO:GSE61220 data set. |
| paired_diff | Run paired DESeq2 and DEXSeq analyses |
| paired_ora | Paired Over-Representation Analysis |
| plot_ora | Scatter plot of Over-Representation Analysis results |
| prepare_msigdb | Load MSigDB and convert to names list of gene sets |