PharmacOGenomics Ontology Support

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Documentation for package ‘pogos’ version 1.29.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

basicDecoder	convert binary output of GET()$content to list
CCLE_drts	compounds_v1: serialization of compounds info from PharmacoDb v1
cell_lines_v1	compounds_v1: serialization of compounds info from PharmacoDb v1
compoundsByCell	initial version of compound browser over pharmacoDb cells
compounds_v1	compounds_v1: serialization of compounds info from PharmacoDb v1
datasets_v1	compounds_v1: serialization of compounds info from PharmacoDb v1
DRProfile-class	DRProfSet is a class for managing dose-response information about cell lines from a pharmacogenomics dataset
DRProfSet	DRProfSet is a class for managing dose-response information about cell lines from a pharmacogenomics dataset
DRProfSet-class	DRProfSet is a class for managing dose-response information about cell lines from a pharmacogenomics dataset
DRTraceSet	DRTraceSet class manages dose-response information for a single cell line, multiple drugs
DRTraceSet-class	DRTraceSet class manages dose-response information for a single cell line, multiple drugs
getDrugs	DRProfSet is a class for managing dose-response information about cell lines from a pharmacogenomics dataset
getDrugs-method	DRProfSet is a class for managing dose-response information about cell lines from a pharmacogenomics dataset
iriCCLE	obtain an example trace set stored locally, for irinotecan and selected cell lines
plot-method	DRProfSet is a class for managing dose-response information about cell lines from a pharmacogenomics dataset
plot-method	DRTraceSet class manages dose-response information for a single cell line, multiple drugs
rxdbQuery_v1	very simple query formulation, build queries using endpoints of bhklab PharmacoDB API
tissues_v1	compounds_v1: serialization of compounds info from PharmacoDb v1
topEndpoints_v1	enumerate top level endpoint terms for bhklab PharmacoDB API
traces	trace extractor
[-method	subscripting on DRProfSet extracts a profile for a single drug whose name constitutes the index